nextflow-ioOfficial·12 Agent Skills Included

training

Author, test, and validate Nextflow training course materials

Creates new lessons, modules, and exercises for Nextflow workflow training courses. Validates heading numbering, code highlighting, inline formatting, and writing style to eliminate manual review errors. Runs tutorial walkthroughs and tests example scripts in Docker to confirm documentation matches real outputs.

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npx skills add nextflow-io/training --all -g -y

Available:

Gives your AI agent the repository conventions, writing style rules, and skill routing instructions needed to author and validate Nextflow training content correctly.

All Skills in This Repository (12)

Pure Emerald Level Indicators

📦 In Repo

nextflow-io

stop-preview

Stop the training-mkdocs Docker container to terminate the MkDocs preview server.

Validate Training Materials

Validate Nextflow training materials for structure, formatting, and content accuracy.

Test Nextflow Example Script

Execute Nextflow scripts and verify outputs against documentation.

new-lesson

Create numbered lesson pages with a templated Markdown structure.

Check Code Block Highlights

Validate hl_lines highlights in Markdown code blocks and report mismatches.

add-exercise

Insert formatted exercise and solution blocks into training lessons.

Docker Environment Setup

Provision a reproducible Docker environment for Nextflow training examples.

Run Tutorial Walkthrough

Execute tutorial commands and validate outputs against solutions.

Find TODO and FIXME Comments

Detect and categorize TODO and FIXME comments in Markdown, Nextflow, and config files.

Check Inline Code Formatting

Validate inline code backticks and Groovy syntax highlighting in Markdown documents.

new-module

Scaffold a complete training module structure with docs layout and navigation files.

preview

Start a local MkDocs preview server via Docker or uv on port 8000.

Official

Advanced

Frequently Asked Questions

FAQPage Schema

How to install Nextflow Training skills?▼

Run `npx skills add nextflow-io/training --all -g -y` in your terminal to install all skills in this suite globally.

How to create a new Nextflow training lesson?▼

Use the new-lesson skill, which scaffolds a properly numbered lesson page with the correct heading structure, code blocks, and takeaway sections for your chosen module.

How to check if tutorial documentation matches real outputs?▼

The run-tutorial skill walks through a lesson exactly as a learner would, running every command and comparing actual results against the documented examples.

Do these skills work with Claude Code?▼

Yes. All skills follow the universal SKILL.md standard and run directly in Claude Code and other compatible coding environments.

Can I test Nextflow examples without a local setup?▼

Yes. The docker-setup skill configures a ready-to-use container, including support for containerized pipelines and Apple Silicon Macs.