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zhongzhxzhongzhxCommunity·1 Agent Skills Included

literature-harvest

Keyword-driven scholarly literature search, download, and deduplication

Searches PubMed, Europe PMC, Crossref, and OpenAlex for any keyword set and builds candidate literature tables. Downloads legally accessible PDFs or HTML/XML full texts, then runs a second pass to chase PDFs from saved HTML pages. Deduplicates downloaded files by DOI, title, and hash, eliminating hours of manual searching and file cleanup. Resumes interrupted runs and produces summary reports for reproducible research workflows.
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npx skills add zhongzhx/literature-harvest --all -g -y

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zhongzhxzhongzhx

keyword-research-harvest

Automate keyword-driven literature harvesting from PubMed, Europe PMC, Crossref, and OpenAlex.

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Frequently Asked Questions

FAQPage Schema
How to install literature-harvest?▼

Run `npx skills add zhongzhx/literature-harvest --all -g -y` in your terminal to install this skill globally.

How to batch-download research papers by keyword?▼

Edit the config template with your topic keywords, then run the harvest script to search PubMed, Europe PMC, Crossref, and OpenAlex and download all legally accessible full texts automatically.

Does it work for topics other than biology?▼

Yes. The skill works for any keyword set; you simply edit the queries and filter terms in the config file for your own research topic.

What happens if a download run gets interrupted?▼

You can resume anytime with the continue script, which retries failed downloads, chases PDFs from saved HTML pages, and deduplicates the final file set.

Do I need coding experience to use it?▼

No. Once installed, your AI agent reads the SKILL.md instructions and runs the search, download, and deduplication steps from your plain-English request.

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