Scaffold Bactopia modules from Bioconda packages with standard files and tests.
npx skills add https://github.com/bactopia/bactopia --skill add-module-bactopia
Please help me install this Agent Skill. Skill: add-module Source: https://github.com/bactopia/bactopia/tree/main/.claude/skills/add-module Command: npx skills add https://github.com/bactopia/bactopia --skill add-module-bactopia
Scaffold a complete Bactopia module scaffold from a bioconda/conda-forge package, generating main.nf, module.config, schema.json, and test files to standard project conventions.
Provide the bioconda/conda-forge package name to scaffold a new Bactopia module.
High-intent search queries and answers about installing and using this skill.
Scaffolding a Bactopia module from a bioconda package requires specifying the package name to auto-generate main.nf, module.config, schema.json, and test files. This ensures new tool modules immediately conform to standard project conventions with valid GroovyDoc and nf-test templates.
Scaffolding a Bactopia module generates main.nf, module.config, schema.json, and test files equipped with GroovyDoc and nf-test templates. These files create a complete module skeleton that satisfies standard project requirements for integrating new bioconda tools.
Yes, the module scaffold includes nf-test templates and GroovyDoc documentation for bioconda tools. It validates the structure and documents prerequisites through interactive questioning to ensure consistent module quality across the generated files.
Yes, you can create a conda-forge module skeleton without writing boilerplate by running the scaffold with just the package name. It automates generating the required main.nf, configuration, schema, and test files to standard project conventions.
The best way to ensure new Bactopia modules meet project conventions is to use a scaffolding process that applies phased workflows and validates structure. Auto-generating skeleton files from bioconda or conda-forge packages guarantees consistent module quality and standard formatting.
bactopiaScaffolds a complete Bactopia Tool pipeline from a bioconda package.
cin12211Refactor code by renaming symbols and extracting modules with impact analysis.
bactopiaRun bactopia-status to parse JSON and summarize project health metrics.
bactopiaScaffold Bactopia subworkflows with main.nf, tests, and configuration files.
