add-bactopia-tool
OfficialScaffold a complete Bactopia tool across tiers.
Authorbactopia
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Scaffold a complete Bactopia Tool across all three tiers—module, subworkflow, and workflow entry—under workflows/bactopia-tools/. It creates all necessary files (main.nf, module.config, schema.json, nextflow.config, tests) so you can add a bactopia tool with minimal manual setup.
Core Features & Use Cases
- Creates all three tiers (Module, Subworkflow, Workflow) for a bactopia-tool from a single bioconda package.
- Generates main.nf, module.config, schema.json, nextflow.config, and tests, wiring up scaffolds ready for customization.
- Use when adding a new bactopia tool or wiring a bioconda package into bactopia-tools.
Quick Start
Ask the tool to scaffold a new bactopia-tool from a bioconda package and it will generate all three tiers ready for customization.
Dependency Matrix
Required Modules
bactopia-scaffoldbactopia-lintconda
Components
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: add-bactopia-tool Download link: https://github.com/bactopia/bactopia/archive/main.zip#add-bactopia-tool Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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