merge-schemas
OfficialRegenerate Bactopia workflow schemas quickly.
Authorbactopia
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Regenerate nextflow.config and nextflow_schema.json for Bactopia workflows by running bactopia-merge-schemas. Use when asked to merge schemas, regenerate workflow config, rebuild nextflow_schema.json, or sync workflow configs after module schema changes.
Core Features & Use Cases
- Identify and target workflows via catalog.json using exact names, lists, glob patterns, or broad categories (all tools, all named, or all workflows).
- Resolve targets to precise output directories and determine workflow type (named or tool) for accurate reports.
- Validate existing output files, run the merge-schemas operation, and summarize results with per-target status.
Quick Start
Run bactopia-merge-schemas to regenerate schema and config files for the target workflows.
Dependency Matrix
Required Modules
bashcondabactopia-merge-schemaspython3
Components
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: merge-schemas Download link: https://github.com/bactopia/bactopia/archive/main.zip#merge-schemas Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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