alignment-stalign
CommunityLandmark-guided alignment of two spatial slices.
Authorchenyhvvvv
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Align two cell-level spatial transcriptomics slices using landmark points to transform one slice into the coordinate space of the other, enabling direct comparison and integration of spatial data.
Core Features & Use Cases
- Align two slices with user-provided landmark pairs to initialize a transform and refine with LDDMM.
- Produce a new aligned slice with transformed coordinates while preserving the original slices.
- Use case: compare spatial distributions across samples by aligning slices before downstream analyses.
Quick Start
Provide the source slice, target slice, and at least three landmark point pairs to generate an aligned slice.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alignment-stalign Download link: https://github.com/chenyhvvvv/STAT-agent/archive/main.zip#alignment-stalign Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 471,000+ vetted skills library on demand.