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registration-paste

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Align multiple spatial slices with PASTE.

Data & Analytics#alignment#spatial-transcriptomics#paste#adata#multi-slice#slice-registration
Authorchenyhvvvv
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Align multiple spatial slices across experiments by matching spots across slices using the PASTE method to enable joint analyses.

Core Features & Use Cases

  • PASTE-based alignment of multiple slices via optimal transport for cross-slice correspondence
  • Outputs aligned coordinates in adata.obsm['spatial_registered'] for integrated analysis
  • Visual overlays to compare before and after alignment across slices

Quick Start

Load at least two slices into your session and run the PASTE registration workflow to generate spatially registered coordinates.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

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Please help me install this Skill:
Name: registration-paste
Download link: https://github.com/chenyhvvvv/STAT-agent/archive/main.zip#registration-paste

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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