bio-spatial-transcriptomics-spatial-visualization
CommunityVisualize spatial transcriptomics with Squidpy.
Authorya-way
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Visualize spatial transcriptomics data by overlaying gene expression and annotations on tissue sections, enabling intuitive interpretation of spatial patterns.
Core Features & Use Cases
- Spatial visualization of gene expression on tissue coordinates using Squidpy and Scanpy.
- Overlay cluster annotations and histology images for integrated tissue context.
- Quick generation of publication-ready figures and exploratory plots for spatial datasets.
Quick Start
Load an annotated spatial-omics dataset and generate publication-ready tissue plots showing gene expression and clusters.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-spatial-transcriptomics-spatial-visualization Download link: https://github.com/ya-way/cytoclaw-skills/archive/main.zip#bio-spatial-transcriptomics-spatial-visualization Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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