squidpy
CommunitySpatial omics analysis in Python.
Data & Analytics#python#visualization#spatial-transcriptomics#scanpy#spatial-omics#squidpy#neighborhood-analysis
AuthorCHENyiru3
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Squidpy provides a comprehensive toolkit to analyze spatial omics data within Python, enabling researchers to interpret spatial relationships in tissues across platforms like Visium, Xenium, and MERFISH.
Core Features & Use Cases
- Spatial neighborhood analysis and clustering
- Visualization of spatial gene expression and trajectories
- Integration with Scanpy for end-to-end pipelines
Quick Start
Install squidpy, load a Visium dataset, and begin exploring spatial neighborhoods and gene expression patterns.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: squidpy Download link: https://github.com/CHENyiru3/AI-Skills-Collections/archive/main.zip#squidpy Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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