niche-detection
CommunityDetect spatial niches with Harmonics.
Authorchenyhvvvv
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Identify and characterize spatial cellular niches (microenvironments) in spatial transcriptomics data using a Harmonics hierarchical model.
Core Features & Use Cases
- Identify spatial niches from a single-slice dataset based on cell-type composition and spatial layout.
- Perform hierarchical refinement and niche merging using the Harmonics framework.
- Assign niche labels back to cells for downstream analyses.
Quick Start
Run the Harmonics niche-detection workflow on your spatial dataset to assign niche labels to cells.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: niche-detection Download link: https://github.com/chenyhvvvv/STAT-agent/archive/main.zip#niche-detection Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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