alterlab-cbioportal
CommunityExplore cancer genomics data with cBioPortal.
Data & Analytics#data-analysis#mutations#cancer-genomics#clinical-data#cbioportal#copy-number#pan-cancer
AuthorAlterLab-IEU
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This skill enables researchers to programmatically access multidimensional cancer genomics data from cBioPortal, enabling rapid querying of mutations, CNAs, expression, and clinical associations across hundreds of studies.
Core Features & Use Cases
- REST API access to studies, molecular profiles, mutations, CNAs, expression, and clinical data.
- Examples and workflows for retrieving gene-level mutation data, altering frequency, and survival associations.
- Pan-cancer analyses across TCGA, GENIE, and MSK-IMPACT to compare alteration patterns and clinical correlations.
Quick Start
Query the cBioPortal REST API for a gene across a study and summarize mutation and CNA counts.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alterlab-cbioportal Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-cbioportal Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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