cbioportal-database
CommunityAccess cancer genomics data.
Authorjaechang-hits
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill provides programmatic access to vast cancer genomics datasets, enabling researchers to query mutations, copy number alterations, gene expression, and clinical data for thousands of cancer studies.
Core Features & Use Cases
- Query Cancer Genomics Data: Retrieve somatic mutations, copy number alterations (CNA), gene expression profiles, and clinical data (survival, stage, treatment) for thousands of cancer studies via the cBioPortal REST API.
- Analyze Tumor Data: Use for tumor mutation burden analysis, oncoprint queries, and survival analysis.
- Use Case: Analyze the frequency of TP53 mutations across different TCGA cancer types to understand its role in various cancers.
Quick Start
Use the cbioportal-database skill to list all available cancer types.
Dependency Matrix
Required Modules
requestspandasmatplotlib
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: cbioportal-database Download link: https://github.com/jaechang-hits/SciAgent-Skills/archive/main.zip#cbioportal-database Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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