alterlab-gtex
CommunityLink GWAS signals to tissue gene regulation.
AuthorAlterLab-IEU
Version1.0.0
Installs0
System Documentation
What problem does it solve?
GTEx-based data enables researchers to interpret non-coding genetic variation by linking variants to tissue-specific gene expression and regulatory effects.
Core Features & Use Cases
- Access tissue-specific expression (median TPM) and regulatory QTL data across 54 tissues via GTEx REST API.
- Retrieve significant eQTLs, sQTLs, and eGenes to prioritize tissues and candidate genes for functional follow-up.
- Use cases include interpreting GWAS loci by mapping signals to genes and tissues and exploring tissue-specific regulatory mechanisms.
Quick Start
Query a gene's tissue-specific expression and its significant eQTLs across GTEx tissues to interpret a GWAS signal.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
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Please help me install this Skill: Name: alterlab-gtex Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-gtex Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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