alterlab-primekg
CommunityQuery PrimeKG for multiscale biomedical insights.
AuthorAlterLab-IEU
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Researchers need an integrated view of biomedical data bridging genes, drugs, diseases, and phenotypes. PrimeKG provides a unified graph to discover connections that inform target identification and repurposing efforts.
Core Features & Use Cases
- Search for nodes (genes, proteins, drugs, diseases, phenotypes) to locate relevant entities quickly.
- Retrieve direct neighbors and clinical evidence to understand immediate relationships.
- Analyze local disease context by summarizing associated genes, drugs, and phenotypes for a disease.
- Identify drug-disease paths for potential repurposing opportunities and mechanistic insights.
Quick Start
Run the script to search for a disease or gene and retrieve its connected context from PrimeKG.
Dependency Matrix
Required Modules
pandas
Components
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alterlab-primekg Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-primekg Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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