query-opentarget

Queries OpenTargets Platform for drug-target associations and disease-gene evidence via structured GraphQL responses.

401|53|Updated Feb 26, 2026
One-click install
npx skills add https://github.com/Runchuan-BU/BioClaw --skill query-opentarget
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: query-opentarget
Source: https://github.com/Runchuan-BU/BioClaw/tree/main/.claude/skills/query-opentarget
Command: npx skills add https://github.com/Runchuan-BU/BioClaw --skill query-opentarget

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Researchers and clinicians need a fast, programmatic way to find and evaluate gene-disease associations, drug-target relationships, and supporting evidence across heterogeneous data sources; this Skill lets you retrieve and inspect those associations from the OpenTargets Platform to inform target selection and validation.

Core Features & Use Cases

  • Search targets and diseases: look up genes by symbol or Ensembl ID and find associated diseases, or search diseases and return top associated targets.
  • Evidence and drug annotations: retrieve evidence scores, datasource breakdowns, known drugs, mechanism of action, and clinical phase for target-drug links.
  • Use Case: identify the top genetic targets for a disease of interest and list known drugs and supporting evidence to inform experimental prioritization.

Quick Start

Query OpenTargets for the top five targets associated with Alzheimer's disease and show their evidence scores and any known drugs.

Frequently Asked Questions about query-opentarget

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I find top genetic targets for a disease using OpenTargets evidence scores?

To find top genetic targets for a disease, query the OpenTargets Platform to retrieve associated targets ranked by overall evidence scores. You receive structured responses containing standard Ensembl and EFO identifiers along with datasource breakdowns for programmatic target validation.

Can I retrieve known drugs and mechanism of action for a specific drug target?

Yes, you can retrieve known drugs and mechanism of action for a specific target. Querying the OpenTargets Platform returns drug annotations and clinical phase information alongside target-drug links, supporting drug-target association analysis and literature review workflows.

What is target validation and how do datasource breakdowns support disease-gene evidence?

Target validation evaluates disease-gene associations using heterogeneous data sources. The OpenTargets Platform provides datasource breakdowns for evidence scores, allowing you to inspect the specific genetic, literature, and drug evidence contributing to an overall target-disease association.

How do I query diseases linked to a specific gene symbol or Ensembl ID?

To query diseases linked to a gene, search by gene symbol or Ensembl ID to retrieve associated diseases from the OpenTargets Platform. The results provide standard EFO identifiers and evidence scores for programmatic downstream bioinformatics analysis.

Does this GraphQL approach return structured responses for programmatic downstream analysis?

Yes, querying the OpenTargets Platform uses GraphQL to return structured responses. These include evidence scores, datasource breakdowns, standard Ensembl and EFO identifiers, and known drug annotations formatted for programmatic downstream analysis.

What are the limitations of using OpenTargets Platform data for target validation workflows?

OpenTargets Platform data for target validation is limited to retrieving and inspecting existing gene-disease associations and drug-target relationships. It provides evidence scores and datasource breakdowns to inform experimental prioritization but does not perform internal predictive modeling.