berdl

You can query microbial genomic data from the KBase BERDL Data Lakehouse by executing SQL queries through the Skill's API endpoints. It requires a KBASE_AUTH_TOKEN for authentication to access pangenome data, genome statistics, and functional annotations.

Yes, you can retrieve thermodynamic properties and biochemical reaction data by executing SQL queries against the biochemistry database within the BERDL Data Lakehouse. The Skill facilitates exploration of biochemistry models and functional annotations.

Available data types for microbial discovery in the BERDL Data Lakehouse include pangenome data, species information, genome statistics, gene clusters, functional annotations, fitness data, and biochemistry models. You can explore these through database listing and sampling endpoints.

Yes, a KBASE_AUTH_TOKEN is required for authentication to access genome statistics and species information. The token ensures secure programmatic access to the BERDL Data Lakehouse via its API interactions and SQL query endpoints.

You can list available databases and retrieve table schemas by using the Skill's dedicated endpoints for listing databases, tables, and schemas. This allows you to inspect the structure of pangenome and biochemistry data before executing your SQL queries.

The Skill integrates biochemistry data with pangenome analysis by allowing cross-database SQL queries. You can find genes associated with a metabolic pathway across microbial strains in the pangenome database and retrieve corresponding reaction thermodynamics from the biochemistry database.