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bids-organizer

Official

Turn raw neuroimaging data into BIDS.

Data & Analytics#workflow#data-organization#neuroimaging#eeg#bids#dcm2nii#bids-validator
AuthorCUHK-AIM-Group
Version1.0.0
Installs0

System Documentation

What problem does it solve?

BIDS Organizer automatically converts raw or semi-organized neuroimaging data (DICOM, NIfTI, EEG, etc.) into a standardized BIDS-compliant dataset, reducing manual reformatting and naming errors.

Core Features & Use Cases

  • Data type detection and DICOM → NIfTI conversion with proper BIDS naming.
  • Plan generation with subject/session labeling and a confirmation step.
  • Delegation to base tools (dcm2nii, mne-eeg-tool, claw-shell) and BIDS validation.

Quick Start

Provide a dataset input directory containing raw neuroimaging data and run the BIDS organizer to generate a compliant dataset.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

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Please help me install this Skill:
Name: bids-organizer
Download link: https://github.com/CUHK-AIM-Group/NeuroClaw/archive/main.zip#bids-organizer

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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