Detect DICOM, NIfTI, and EEG data and generate a BIDS organization plan.
npx skills add https://github.com/CUHK-AIM-Group/NeuroClaw --skill bids-organizer
Please help me install this Agent Skill. Skill: bids-organizer Source: https://github.com/CUHK-AIM-Group/NeuroClaw/tree/main/skills/bids-organizer Command: npx skills add https://github.com/CUHK-AIM-Group/NeuroClaw --skill bids-organizer
BIDS Organizer automatically converts raw or semi-organized neuroimaging data (DICOM, NIfTI, EEG, etc.) into a standardized BIDS-compliant dataset, reducing manual reformatting and naming errors.
Provide a dataset input directory containing raw neuroimaging data and run the BIDS organizer to generate a compliant dataset.
High-intent search queries and answers about installing and using this skill.
To convert raw DICOM files to a BIDS-compliant neuroimaging dataset, the tool detects input data, generates a step-by-step plan with proper naming, delegates conversion to dcm2nii, and runs BIDS validation.
The best way to organize EEG and NIfTI data into BIDS automatically is by generating a subject and session labeling plan, confirming the execution steps, and delegating tasks to mne-eeg-tool before validating.
Yes, the BIDS organization process requires explicit user confirmation before converting DICOM, presenting a concrete execution plan with estimated effort and risks to ensure safe data transformation.
Yes, you can validate your neuroimaging data structure immediately after DICOM to BIDS conversion, because the workflow automatically runs BIDS validation upon completion of the delegated conversion tasks.
You need a generated plan before executing BIDS data organization to review subject and session labeling, assess estimated effort and risks, and prevent manual reformatting or naming errors in neuroimaging data.
Yes, dcm2nii and mne-eeg-tool work together in a single neuroimaging BIDS conversion workflow, where the organizer detects specific data types and delegates each format to its appropriate base tool for processing.
Lord1EgyptOrganize and validate neuroscience data according to the BIDS specification.
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