Validate and organize BIDS-compliant neuroimaging dataset structures.
npx skills add https://github.com/bcmcpher/my-skills --skill bids
Please help me install this Agent Skill. Skill: bids Source: https://github.com/bcmcpher/my-skills/tree/main/plugins/bids/skills/bids Command: npx skills add https://github.com/bcmcpher/my-skills --skill bids
Load Brain Imaging Data Structure (BIDS) conventions into context to guide validation, naming, and dataset organization for neuroimaging projects.
Load the BIDS references and run the validator or the structural checker to validate a dataset.
High-intent search queries and answers about installing and using this skill.
To validate neuroimaging filenames for BIDS compliance, run the structural checker to parse BIDS entity ordering and suffix rules across modalities like anat and func. It identifies naming errors and suggests corrections referencing included BIDS documentation.
BIDS sidecar JSON validation checks for the presence and correct placement of required JSON sidecar files alongside neuroimaging data. It verifies that sidecar fields match BIDS conventions and points to relevant documentation for missing or malformed metadata.
To organize neuroimaging data into a valid BIDS directory structure, apply the BIDS conventions loaded into context to guide dataset building, auditing, or correcting. It validates directory layouts across supported modalities like anat, func, dwi, fmap, perf, eeg, ieeg, meg, pet, and beh.
Yes, you can check BIDS compliance without a full bids-validator by using the fallback structural checker. It provides essential validation signals for filename rules, sidecar JSON presence, and directory structure when a full validator is unavailable in your environment.
Supported BIDS modalities for dataset structure auditing include anat, func, dwi, fmap, perf, eeg, ieeg, meg, pet, and beh. The validation process applies BIDS entity ordering and suffix rules to verify correct file naming and directory organization for each modality.
Lord1EgyptOrganize and validate neuroscience data according to the BIDS specification.
bcmcpherManage Nipoppy neuroimaging dataset workflows from initialization to extraction.
CUHK-AIM-GroupGenerate and execute fMRIPrep preprocessing plans for BIDS datasets.
crazymsnOrganize neuroscience datasets into BIDS-compliant directory structures.
