nipoppy-cli
CommunityMaster Nipoppy workflows from init to extract.
Authorbcmcpher
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Nipoppy CLI helps researchers manage and automate complex neuroimaging data workflows in a single, consistent interface, reducing manual setup and error-prone steps.
Core Features & Use Cases
- Centralized control over dataset initialization, curation tracking, reorganization, BIDS conversion, processing, and IDP extraction.
- Workflow-agnostic guidance with dataset-state checks and reference materials to reduce misconfigurations.
- Use case: Initialize a new dataset, register participants, track; reorganization; run bidsify and processing pipelines; extract IDPs.
Quick Start
Run nipoppy init /data/my-study to scaffold a new Nipoppy dataset, then follow with manifest edits and subsequent commands in the typical linear workflow.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: nipoppy-cli Download link: https://github.com/bcmcpher/my-skills/archive/main.zip#nipoppy-cli Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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