imaging-mass-cytometry
CommunityEnd-to-end IMC data segmentation and mapping.
Data & Analytics#segmentation#spatial-analysis#phenotyping#IMC#tissue-imaging#imaging-mass-cytometry#cell-features
Authorzongtingwei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Workflow guidance for multiplexed imaging mass cytometry including segmentation, phenotyping, and spatial summarization in tissue sections.
Core Features & Use Cases
- Segment cells in IMC images and quantify marker expressions.
- Phenotype cells and generate tissue-level spatial summaries.
- Use case: analyze multiplexed tissue imaging to derive cell states and neighborhood patterns.
Quick Start
Load IMC data, run segmentation, assign phenotypes, and produce spatial summary reports.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: imaging-mass-cytometry Download link: https://github.com/zongtingwei/Bioclaw_Skills_Hub/archive/main.zip#imaging-mass-cytometry Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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