bio-gene-calling

To predict gene features in prokaryotic and viral genomes, you can use this skill to invoke Prodigal or Prodigal-GV for gene calling and generate standardized GFF3, FAA, and FNA outputs. It automatically selects the appropriate caller based on organism class and data availability.

Yes, you can detect tRNA and rRNA sequences during genome annotation. The skill performs basic feature annotation and offers optional tRNA and rRNA detection alongside the primary gene calling workflow.

You can annotate gene features in metagenomic bins or contigs by running this skill, which integrates into end-to-end annotation pipelines and supports reproducible workflows for both isolated and metagenomic genomes.

Microbial gene calling workflows generate standardized GFF3, FAA, and FNA output formats. The skill validates results to ensure non-empty sequences and properly formatted annotations for downstream analysis.

Yes, it supports eukaryotic genome annotation by invoking BRAKER or AUGUSTUS as the gene caller. The skill covers prokaryotes, viruses, and eukaryotes across contigs or bins.

Automated gene callers require proper input validation and enforce checks to ensure non-empty sequences. The skill validates results to ensure properly formatted annotations, but accuracy depends on selecting the correct caller for the organism class.