ena-database

You can download raw sequencing reads in FASTQ format and genome assemblies from the European Nucleotide Archive programmatically by searching for specific studies, samples, or runs using ENA's query syntax to retrieve the desired files.

Yes, you can fetch nucleotide sequences in FASTA or EMBL format by providing a specific accession number, allowing direct retrieval of sequence data from the ENA database without manual web browsing.

You can search for RNA-Seq studies for specific organisms using ENA's query syntax to filter studies, samples, and runs by organism and publication year, returning matching accessions and titles.

Yes, ENA data retrieval supports cross-referencing records with external databases like UniProt and PDB, enabling you to link genomic sequences and annotations to related protein structures and functional data.

Yes, you can explore organism lineage and find species information through taxonomy queries, allowing you to retrieve detailed taxonomic classifications for organisms stored in the ENA database.

Yes, the requests library is required as a dependency to programmatically access the European Nucleotide Archive, enabling you to search for genomic data, retrieve sequences, and download files via Python scripts.