Retrieve nucleotide sequences and associated data from ENA via REST APIs.
npx skills add https://github.com/ovachiever/droid-tings --skill ena-database
Please help me install this Agent Skill. Skill: ena-database Source: https://github.com/ovachiever/droid-tings/tree/main/skills/ena-database Command: npx skills add https://github.com/ovachiever/droid-tings --skill ena-database
ENA-database enables programmatic access to the European Nucleotide Archive for retrieving sequences, raw reads, assemblies, annotations, and taxonomy information for genomics workflows.
Use Portal API to search for samples by study_accession and fetch a FASTA/EMBL data, or query taxonomy for a given tax ID.
High-intent search queries and answers about installing and using this skill.
Use the ENA Browser API to fetch sequence records by accession. Submit accession identifiers and specify output formats (XML, FASTA, EMBL) via REST endpoints to retrieve raw sequences, assemblies, or annotations directly into your workflow.
Yes. The Portal API supports bulk downloads of raw reads in FASTQ format across multiple samples and studies. Query by study_accession or metadata criteria, then retrieve datasets programmatically or via FTP within the 50 requests-per-second rate limit.
ENA provides multiple formats: XML, JSON, TSV/CSV for metadata; FASTA and FASTQ for sequences; BAM/CRAM for aligned reads. Choose formats via the Portal, Browser, or Taxonomy API depending on your downstream analysis requirements.
Use the Portal API to search across studies, samples, assemblies, and analyses by accession, metadata criteria, or taxonomy ID. Query returns structured results in XML or JSON, filterable by organism, sequence type, or project identifier.
Yes. The Taxonomy and Cross-Reference APIs provide linked taxonomic classifications and external database references. Retrieve these programmatically via REST and embed results into annotation, classification, or comparative genomics workflows.
ovachieverRetrieve nucleotide sequences and associated data from ENA via REST APIs.
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biomaps-infraRetrieve nucleotide sequences, raw reads, and genome assemblies from ENA via REST APIs.
yf8578Retrieve nucleotide sequences, FASTQ reads, and genome assemblies from ENA via REST APIs and FTP.
