Retrieve nucleotide sequences, FASTQ reads, and genome assemblies from ENA via REST APIs and FTP.
npx skills add https://github.com/yf8578/clawomics --skill ena-database-yf8578
Please help me install this Agent Skill. Skill: ena-database Source: https://github.com/yf8578/clawomics/tree/main/skills/ena-database Command: npx skills add https://github.com/yf8578/clawomics --skill ena-database-yf8578
This Skill provides programmatic access to the European Nucleotide Archive (ENA), enabling users to retrieve DNA/RNA sequences, raw reads, and genome assemblies for bioinformatics analyses.
Use the ena-database skill to retrieve raw sequencing reads for accession ERR123456.
High-intent search queries and answers about installing and using this skill.
To retrieve raw sequencing reads from ENA, provide a study or experiment accession number like ERR123456 to fetch associated FASTQ files. This skill queries ENA REST APIs and FTP to return raw sequencing data for downstream bioinformatics pipelines.
Yes, you can search ENA metadata for studies, samples, and experiments programmatically. The skill facilitates querying the European Nucleotide Archive based on various criteria to return matching metadata records.
You can access nucleotide sequences, raw reads (FASTQ files), and genome assemblies from the European Nucleotide Archive. The skill retrieves these data types to support genomics and bioinformatics analyses.
Yes, this ENA data retrieval skill supports bulk data downloads via FTP. It facilitates access to comprehensive public repository data, allowing you to download genome assemblies and raw reads for bioinformatics pipelines.
The best way to integrate ENA nucleotide sequences into a bioinformatics pipeline is using REST APIs to programmatically query and fetch data. This skill provides direct access to ENA's public repository for pipeline integration.
robotlearning123Retrieve nucleotide sequences, raw reads, and genome assemblies from ENA via REST APIs and FTP.
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robinbarvaagRetrieve nucleotide sequences, FASTQ reads, and genome assemblies from ENA via REST APIs.
