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bio-pathway-kegg-pathways

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Identify enriched KEGG pathways from gene lists.

Data & Analytics#bioinformatics#enrichment#gene-list#pathway#kegg#clusterProfiler
Authorya-way
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Identify enriched KEGG pathways and modules from a gene list to interpret omics data and reveal affected biological processes.

Core Features & Use Cases

  • Run KEGG pathway enrichment using enrichKEGG for chosen organism codes and gene IDs, and enrichMKEGG for module-level enrichment.
  • Support conversion of gene identifiers to Entrez IDs as needed and provide ready-to-interpret results, tables, and visualizations.
  • Typical use cases include analyzing DE genes from RNA-seq, comparing pathways across conditions, and generating interpretable reports for downstream storytelling.

Quick Start

Run KEGG pathway and module enrichment on your gene list using enrichKEGG and enrichMKEGG with the correct organism code.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

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Please help me install this Skill:
Name: bio-pathway-kegg-pathways
Download link: https://github.com/ya-way/cytoclaw-skills/archive/main.zip#bio-pathway-kegg-pathways

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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