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bio-pathway-w Wikipathways

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WikiPathways enrichment with R tools.

Data & Analytics#r#enrichment#pathway-analysis#gene-list#gsea#clusterprofiler#wikipathways
Authorya-way
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Analyzes gene lists to identify enriched WikiPathways, enabling interpretation of biological signals with community-curated pathway knowledge.

Core Features & Use Cases

  • Over-representation analysis using enrichWP against WikiPathways definitions for 30+ species.
  • Gene Set Enrichment Analysis (GSEA) with gseWP on ranked gene lists.
  • Supports multiple organisms and ID conversion workflows to produce readable results for downstream reporting.

Quick Start

Run WikiPathways enrichment on a list of Entrez IDs or gene symbols to discover enriched pathways and generate plots.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: bio-pathway-w Wikipathways
Download link: https://github.com/ya-way/cytoclaw-skills/archive/main.zip#bio-pathway-w-wikipathways

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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