bio-reads-qc-mapping

To run QC and map sequencing reads, ingest raw reads with a sample sheet, perform trimming, and map them to a reference to generate reproducible coverage statistics and logs.

Yes, this workflow supports both Illumina short reads and long-read data from Nanopore and PacBio, generating transparent logging and reproducible coverage results across diverse sequencing platforms.

The best way to ensure reproducible quality control is to specify input validation, run QC and trimming steps, and map reads to a reference, ensuring traceable results and logs for quality gates.

Yes, you need an optional reference to map your reads against, as the workflow maps sequencing reads to a reference to generate basic coverage reports and validate samples.

Your read mapping workflow lacks traceability if it skips input validation and transparent logging, which are required to ensure traceable results and logs for quality gates in sequencing projects.