bio-tcr-bcr-analysis-vdjtools-analysis
CommunityAnalyze immune repertoires with VDJtools insights.
Authorya-way
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Immune repertoire analysis often requires combining diversity metrics, clonotype overlap, and clonal-tracking insights across samples. This skill centralizes those tasks around VDJtools to enable reproducible comparisons and visualizations.
Core Features & Use Cases
- Compute diversity metrics (Shannon, Simpson, Chao1), sample overlap, spectratype, and V/J segment usage for immune repertoires.
- Track clonotypes over time and identify public or shared clonotypes across samples or conditions.
- Use with multi-sample metadata to compare groups and visualize clonal dynamics.
Quick Start
Upload MiXCR/VDJtools-compatible input and run the workflow to produce diversity metrics, overlap, spectratype, and clonal-tracking outputs.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-tcr-bcr-analysis-vdjtools-analysis Download link: https://github.com/ya-way/cytoclaw-skills/archive/main.zip#bio-tcr-bcr-analysis-vdjtools-analysis Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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