bio-workflows-tcr-pipeline
CommunityEnd-to-end TCR/BCR repertoire analysis pipeline.
Authorya-way
Version1.0.0
Installs0
System Documentation
What problem does it solve?
End-to-end TCR/BCR repertoire analysis from raw sequencing data to clonotype metrics, enabling researchers to obtain meaningful immune-repertoire insights with minimal manual orchestration.
Core Features & Use Cases
- Full pipeline orchestration: From MiXCR alignment to clonotype diversity reporting and visualization for bulk and single-cell data.
- Quality control & reproducibility: Provides QC checkpoints and modular integration to enable reproducible analyses.
- Use Case: Apply to immune repertoire studies to compare clonotype diversity across samples or conditions.
Quick Start
Run the end-to-end TCR/BCR pipeline on your sequencing data to obtain clonotype diversity metrics.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-workflows-tcr-pipeline Download link: https://github.com/ya-way/cytoclaw-skills/archive/main.zip#bio-workflows-tcr-pipeline Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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