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AlvaroBiano
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bioinformatics

Index bioinformatics knowledge from bioSkills and ClawBio libraries.

Updated May 2, 2026
Search Tags:#bioinformatics#pipelines#reference-material#clawbio#skill-gateway#bioskills
One-click install
npx skills add https://github.com/AlvaroBiano/hermes-agent --skill bioinformatics-alvarobiano
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: bioinformatics
Source: https://github.com/AlvaroBiano/hermes-agent/tree/main/optional-skills/research/bioinformatics
Command: npx skills add https://github.com/AlvaroBiano/hermes-agent --skill bioinformatics-alvarobiano

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Bioinformatics knowledge and workflows are scattered across multiple repositories. This gateway consolidates domain material from two open-source libraries (bioSkills and ClawBio), enabling fast access to domain-specific references and runnable pipelines on demand.

Core Features & Use Cases

  • Indexes and references two major bioinformatics knowledge bases (bioSkills and ClawBio) to locate relevant domain material.
  • Fetches topic-specific SKILL.md references or runnable pipelines, acting as a discovery gateway for researchers and learners.
  • Use case: a researcher asks for a workflow to perform variant calling; the gateway points to authoritative SKILL.md guidance and runnable pipelines.

Quick Start

Ask for a domain topic (e.g., "variant calling workflow") and I will retrieve the most relevant skill reference from bioSkills or ClawBio and summarize it.

Frequently Asked Questions about bioinformatics

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I find a bioinformatics workflow for variant calling or single-cell analysis?▼

This gateway indexes bioinformatics knowledge from bioSkills and ClawBio to surface guided SKILL.md references. By asking for a domain topic like variant calling, you retrieve relevant runnable pipelines and reference material for genomics and single-cell analysis.

What bioinformatics pipelines are available for genomics and transcriptomics research?▼

Over 400 bioinformatics pipelines are available across genomics, transcriptomics, and single-cell analysis. The gateway indexes knowledge from bioSkills and ClawBio to fetch topic-specific SKILL.md references and runnable workflows for researchers and practitioners.

Can I use this to discover runnable pipelines for specific bioinformatics tasks?▼

Yes, you can discover runnable pipelines for specific bioinformatics tasks. The gateway fetches topic-level SKILL.md references from external libraries, acting as a discovery tool for researchers needing guided workflows for tasks like variant calling.

Do I need to install any dependencies to access bioinformatics reference material?▼

No dependencies are required to access bioinformatics reference material. The gateway operates standalone to index and surface domain-specific knowledge from external open-source libraries, providing quick access to SKILL.md references without installation barriers.

What is the best way to search for domain-specific bioinformatics knowledge across scattered repositories?▼

The best way to search scattered bioinformatics repositories is through this gateway, which consolidates domain material from bioSkills and ClawBio. It indexes external libraries to provide fast access to domain-specific references and runnable pipelines on demand.

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