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matthew-johnson
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bioinformatics

Index bioinformatics skills and reference materials from bioSkills and ClawBio libraries.

Updated Apr 20, 2026
Search Tags:#bioinformatics#genomics#on-demand#reference-materials#skill-library#transcriptomics
One-click install
npx skills add https://github.com/matthew-johnson/hermes-agent --skill bioinformatics-matthew-johnson
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: bioinformatics
Source: https://github.com/matthew-johnson/hermes-agent/tree/main/optional-skills/research/bioinformatics
Command: npx skills add https://github.com/matthew-johnson/hermes-agent --skill bioinformatics-matthew-johnson

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

The Bioinformatics Skills Gateway consolidates domain-specific guidance from bioSkills and ClawBio, giving researchers fast access to curated skills and reference materials on demand.

Core Features & Use Cases

  • Indexes two open-source skill libraries (bioSkills and ClawBio) and exposes a unified gateway to domain knowledge.
  • Fetches on-demand reference materials and runnable pipelines for genomics, transcriptomics, single-cell analysis, pharmacogenomics, and metagenomics.
  • Use Case: A researcher needs authoritative workflow guidance for a complex analysis and retrieves domain-specific SKILL.md content from the libraries.

Quick Start

Identify the domain you need from the index and read the specific SKILL.md in the bioSkills or ClawBio repositories.

Frequently Asked Questions about bioinformatics

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I find runnable pipelines for genomics and transcriptomics analysis?▼

Access runnable pipelines for genomics and transcriptomics by querying an indexed gateway of 400+ on-demand skills. It fetches domain-specific SKILL.md content and reference materials from the bioSkills and ClawBio repositories.

What bioinformatics reference materials are available for single-cell analysis?▼

Bioinformatics reference materials for single-cell analysis include curated SKILL.md entries and runnable pipelines fetched on demand from the bioSkills and ClawBio open-source libraries to provide authoritative workflow guidance.

Do I need internet access to retrieve metagenomics skills from the skill library?▼

Yes, internet access is required to retrieve metagenomics skills from the skill library. The gateway requires connectivity to clone the bioSkills and ClawBio repositories and read frontmatter-backed SKILL.md entries on demand.

What's the best way to access pharmacogenomics workflow guidance on demand?▼

Access pharmacogenomics workflow guidance on demand through a unified gateway indexing two open-source libraries. It exposes domain knowledge and reference materials by cloning repositories and reading SKILL.md entries.

Can I use this gateway to get domain guidance for complex bioinformatics workflows?▼

Yes, you can use this gateway to get domain guidance for complex bioinformatics workflows. It indexes 400+ skills across genomics, transcriptomics, and metagenomics, enabling rapid access to curated reference materials and pipelines.

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