biomni

Automate complex biomedical research tasks with code generation and integrated databases.

Updated Dec 17, 2025
One-click install
npx skills add https://github.com/robotlearning123/claude-scientific-skills --skill biomni-robotlearning123
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: biomni
Source: https://github.com/robotlearning123/claude-scientific-skills/tree/main/scientific-skills/biomni
Command: npx skills add https://github.com/robotlearning123/claude-scientific-skills --skill biomni-robotlearning123

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires biomni, and includes scripts (resource) and references (resource) and assets (resource) components.

What problem does it solve?

The biomni skill autonomously handles multi-step research tasks across genomics, drug discovery, molecular biology, and clinical analysis, enabling complex biological reasoning with code execution and integrated biomedical databases.

Core Features & Use Cases

  • Multi-step Biological Reasoning: Automatically decompose complex tasks into sub-steps and execute them.
  • Code Generation and Execution: Create and execute dynamic analysis pipelines based on input data and task requirements.
  • Data Retrieval and Integration: Access a wide range of integrated biomedical databases for knowledge retrieval and analysis.
  • Use Case: Design a CRISPR screen, analyze single-cell RNA-seq data, predict drug ADMET properties, interpret GWAS results, and much more.

Quick Start

Initialize the biomni agent and execute a task:

from biomni.agent import A1
agent = A1(path='./data', llm='claude-sonnet-4-20250514')
agent.go("Your biomedical research question or task")

Frequently Asked Questions about biomni

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automate single-cell RNA-seq data analysis and genomic tasks?

You can automate single-cell RNA-seq data analysis and genomic tasks by using an agent that decomposes complex biological reasoning into sub-steps, generating and executing dynamic code pipelines for your input data.

What is the best way to predict drug ADMET properties and design a CRISPR screen?

The best way to predict drug ADMET properties and design a CRISPR screen is using an autonomous agent that retrieves knowledge from integrated biomedical databases and executes multi-step molecular biology reasoning.

Does biomni require access to specific LLMs and biological databases for clinical research?

Yes, biomni requires access to various LLMs like claude-sonnet-4-20250514 and integrated biological databases to autonomously execute data retrieval and complex clinical research tasks.

How do I interpret GWAS results using code generation in bioinformatics?

To interpret GWAS results using code generation in bioinformatics, initialize an LLM-based agent that automatically creates and executes dynamic analysis pipelines based on your specific task requirements.

Can I use machine learning for multi-step biomedical research without writing manual pipelines?

Yes, you can apply machine learning to multi-step biomedical research without manual pipelines by deploying an agent that autonomously handles task decomposition, code generation, and database integration.