Map biological identifiers across UniProt, KEGG, ChEMBL, and GO databases.
npx skills add https://github.com/mkurman/tamux --skill bioservices-mkurman
Please help me install this Agent Skill. Skill: bioservices Source: https://github.com/mkurman/tamux/tree/main/skills/scientific-skills/bioservices Command: npx skills add https://github.com/mkurman/tamux --skill bioservices-mkurman
BioServices provides a unified interface to access and orchestrate 40+ bioinformatics resources from Python, eliminating the need to manually script each service and to maintain brittle custom adapters.
Install bioservices and run a simple example to map a UniProt ID to KEGG to verify cross-database mapping.
High-intent search queries and answers about installing and using this skill.
Cross-database identifier mapping for proteins, genes, and compounds is done by querying UniProt, KEGG, ChEMBL, ChEBI, and GO through a unified Python interface. It retrieves live data over the network to translate IDs across these bioinformatics resources.
Pathway discovery and GO annotations are integrated by orchestrating 40+ bioinformatics resources in Python. This eliminates brittle custom adapters and allows you to script multi-database workflows for end-to-end bioinformatics research.
Yes, protein-protein interaction extraction is supported natively. The bioservices library provides a unified interface to 40+ resources, removing the need to manually script each service or maintain custom adapters for bioinformatics research.
Yes, network access is required to retrieve live data. The Skill maps and integrates biological databases across UniProt, KEGG, ChEMBL, and more, relying on active network connections to fetch real-time bioinformatics data.
Python 3 is required to run the bioservices library and execute batch workflows. These scriptable pipelines coordinate multiple services to perform cross-database identifier mapping and integrative bioinformatics analyses.
A unified Python interface eliminates the need to manually script each bioinformatics service and maintain brittle custom adapters. It streamlines batch workflows and multi-database queries for pathway discovery, GO annotations, and protein-protein interactions.
AlterLab-IEUUnify access to 40 bioinformatics services via a single Python interface.
dailycafiAccess bioinformatics databases like UniProt and KEGG for cross-database queries.
Victory-HugoQuery genomic databases including Ensembl, UniProt, NCBI via CLI or Python interface.
qinyan-aiOrchestrates BioServices to map identifiers and retrieve biological data across databases.
