Map identifiers across bioinformatics databases within Python workflows.
npx skills add https://github.com/ovachiever/droid-tings --skill bioservices-ovachiever
Please help me install this Agent Skill. Skill: bioservices Source: https://github.com/ovachiever/droid-tings/tree/main/skills/bioservices Command: npx skills add https://github.com/ovachiever/droid-tings --skill bioservices-ovachiever
Unifies access to multiple bioinformatics databases and services, enabling cross-database queries, ID mappings, and workflow-driven data retrieval.
Use UniProt to map a protein ID to KEGG and retrieve a pathway, then fetch GO annotations.
High-intent search queries and answers about installing and using this skill.
Protein ID mapping across databases like UniProt, KEGG, and ChEBI is unified through bioservices, which handles cross-database queries and returns structured outputs (dictionaries or CSV) for downstream analysis without managing each API separately.
Yes. Bioservices integrates 40+ bioinformatics services including UniProt and KEGG, enabling batch retrieval of protein sequences, pathways, and GO annotations within one Python script with built-in chunking and error handling.
Bioservices abstracts REST and SOAP protocol differences, supporting batch processing with chunking and error handling across UniProt, KEGG, ChEMBL, PubChem, and other resources, returning structured outputs for automation.
No. Bioservices provides unified access to UniProt, KEGG, ChEMBL, PubChem, GO, Reactome, BioGRID, and related resources through a single Python toolkit, eliminating duplicate API integration work.
Bioservices enables querying ChEMBL and PubChem within the same workflow, handling identifier mapping and batch retrieval with structured output generation for integrated compound and protein data analysis.
Bioservices includes built-in error handling and chunking for batch operations, gracefully managing failures across REST and SOAP services so incomplete results don't halt the entire workflow.
SciMate-AIMap biological identifiers across UniProt, KEGG, ChEMBL, ChEBI, GO, and pathway resources.
dailycafiMap metabolites to KEGG, Reactome, and SMPDB pathways with enrichment and topology analysis.
SenseTime-FVGGenerate static and interactive charts from tabular data using matplotlib, seaborn, and plotly.
jackspaceAccess 40+ bioinformatics services and databases via a unified Python API.
