bioservices

Integrate bioinformatics services for data retrieval, queries, and identifier mapping.

3|Updated Apr 17, 2026
One-click install
npx skills add https://github.com/RamanEbrahimi/raman-marketplace --skill bioservices-ramanebrahimi
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: bioservices
Source: https://github.com/RamanEbrahimi/raman-marketplace/tree/main/plugins/agentic-research/skills/scientific-skills/bioservices
Command: npx skills add https://github.com/RamanEbrahimi/raman-marketplace --skill bioservices-ramanebrahimi

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires bioservices, and includes scripts (resource) and references (resource) components.

What problem does it solve?

This Skill streamlines bioinformatics analysis by allowing you to access 40+ services like UniProt, KEGG, ChEMBL, and Reactome within a single Python workflow, eliminating the need to switch between different platforms.

Core Features & Use Cases

  • Multi-Service Integration: Retrieve biological data, perform cross-database queries, and map identifiers across various bioinformatics databases.
  • Sequence Analysis: Run BLAST searches, analyze sequences, and retrieve protein information.
  • Pathway Analysis: Access KEGG and Reactome pathway information for genes and organisms.
  • Compound Database Searches: Search and cross-reference compounds across multiple databases.
  • Use Case: If you need to analyze a protein's sequence, find its pathway, and search for related compounds, this Skill can help you do it all in one go.

Quick Start

Use the bioservices skill to search for a protein's sequence information and pathway associations. Example: 'bioservices get_protein_info ZAP70_HUMAN'.

Frequently Asked Questions about bioservices

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I query multiple bioinformatics databases like UniProt and KEGG in a single workflow?

To query multiple bioinformatics databases in a single workflow, you can use this Skill to retrieve biological data, perform cross-database queries, and map identifiers across 40+ services like UniProt and KEGG without switching platforms.

Can I run sequence analysis and BLAST searches using Python?

Yes, you can run sequence analysis and BLAST searches using Python. This Skill enables you to analyze sequences and retrieve detailed protein information directly through the integrated bioservices library.

What is the best way to access pathway information for specific genes across different databases?

The best way to access pathway information for specific genes is by using this Skill to retrieve data from KEGG and Reactome, allowing you to map and analyze pathway associations for various organisms within one workflow.

Do I need the bioservices library to search for compounds across ChEMBL?

Yes, you need the bioservices Python library installed to search for compounds across ChEMBL. This Skill requires the library as a dependency to access and cross-reference compound databases effectively.

How does cross-database identifier mapping work for biological data?

Cross-database identifier mapping works by integrating multiple bioinformatics services into a unified Python workflow. This allows you to retrieve data from various biological databases and map identifiers seamlessly across them for comprehensive analysis.

Are there limitations when trying to access 40+ bioinformatics services simultaneously?

The main limitation when accessing 40+ bioinformatics services is the dependency on the bioservices library for service access. You must ensure your environment supports this library to maintain stable integration and data retrieval.