cell-communication-liana
CommunityMap cell-type communications with LIANA+.
Data & Analytics#bioinformatics#interaction#ligand-receptor#spatial-transcriptomics#scRNA-seq#liana#cell-type
Authorchenyhvvvv
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Identify significant ligand-receptor interactions between cell types to reveal communication networks from spatial and single-cell data, enabling researchers to interpret cell-type cross-talk.
Core Features & Use Cases
- LIANA+ consensus ranking across multiple LR databases for robust interaction detection.
- Supports cluster-level aggregation by celltype, autocrine signaling detection, and outputs full results.
- Use Case: Analyze spatial transcriptomics to identify signaling between tumor and immune cell types.
Quick Start
Load your annotated adata with celltype labels, run the LIANA+ workflow to compute interactions, and inspect the liana_res results.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: cell-communication-liana Download link: https://github.com/chenyhvvvv/STAT-agent/archive/main.zip#cell-communication-liana Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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