cellcellcommunicationplots

To visualize cell-cell communication results, provide the CCC file from your inference process and select a plot type. The tool outputs publication-ready network, heatmap, or circos graphics tailored for reports and manuscripts.

Available plot types for ligand-receptor interaction data include network, heatmap, circos, dot, box, violin, and ridge plots. These options allow both global overviews and detailed views of cell-cell communication.

Yes, you can subset specific pathways or cell-type pairs using subset expressions. This allows you to filter and compare targeted ligand-receptor interactions across cell types in your visualizations.

You can customize cell-cell communication network plots through configuration options for output formats and resolutions. The tool exposes settings to adjust presentation aesthetics for publication-ready visuals.

The aggregation and interaction methods represent different ways to process and display ligand-receptor interaction data. The configuration exposes these methods to tailor how communication scores are calculated and visualized across cell types.

Yes, it requires a CCC file generated from the CellCellCommunication process. This specific input file contains the ligand-receptor interaction data required to generate the publication-ready visuals.