clinical-decision-support

Generate publication-ready clinical decision support documents with GRADE evidence grading and LaTeX/PDF output.

4|1|Updated Jun 18, 2025
One-click install
npx skills add https://github.com/HolobiomicsLab/Toolomics --skill clinical-decision-support-holobiomicslab
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: clinical-decision-support
Source: https://github.com/HolobiomicsLab/Toolomics/tree/main/mcp_host/skills/scientific-skills/scientific-skills/clinical-decision-support
Command: npx skills add https://github.com/HolobiomicsLab/Toolomics --skill clinical-decision-support-holobiomicslab

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires pandas, numpy, scipy, lifelines, matplotlib, pyyaml, scikit-learn, and includes scripts (resource) and references (resource) and assets (resource) components.

What problem does it solve?

Generate professional clinical decision support (CDS) documents for pharmaceutical companies, clinical researchers, and medical decision-makers. This Skill specializes in analytical, evidence-based documents that inform treatment strategies and drug development, enabling consistent outputs across regulatory submissions and guideline development.

Core Features & Use Cases

  • Document Types: Patient cohort analyses, treatment recommendation reports, clinical pathways.
  • Evidence Grading & Standards: GRADE-based assessments, alignment with NCCN/ASCO/ESMO guidelines, and publication-ready reporting templates.
  • Workflow & Output: LaTeX/PDF generation using built-in templates, TikZ decision algorithms, and publication-quality visuals.

Quick Start

Generate a complete CDS document for a biomarker-guided cancer cohort using the provided templates and references.

Frequently Asked Questions about clinical-decision-support

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I generate publication-ready clinical decision support documents for pharmaceutical regulatory submissions?

You can generate publication-ready clinical decision support documents by providing structured inputs to produce cohort analyses and treatment recommendations. The system applies GRADE-based evidence grading and outputs LaTeX/PDF files with TikZ flowcharts for regulatory compliance.

Does this workflow support GRADE evidence grading and clinical pathway generation?

Yes, GRADE evidence grading is fully supported for clinical pathway generation and treatment recommendations. The workflow enforces GRADE-based assessments and aligns with NCCN, ASCO, and ESMO guidelines to ensure evidence-based clinical decision support reporting.

Can I create biomarker stratification reports with TikZ decision flowcharts in LaTeX?

Creating biomarker stratification reports with TikZ decision flowcharts in LaTeX is supported through built-in templates. The system processes structured patient cohort data to generate clinical pathways and publication-quality visuals for medical affairs.

What is the best way to standardize clinical pathway reporting for NCCN and ESMO guidelines?

The best way to standardize clinical pathway reporting is using built-in templates that align with NCCN, ASCO, and ESMO guidelines. This ensures consistent GRADE-based evidence grading and regulatory-compliant outputs across pharmaceutical research documents.

Do I need pandas and lifelines dependencies for cohort survival analysis in clinical decision support?

Yes, pandas and lifelines are required dependencies for cohort survival analysis in clinical decision support. The environment also uses scipy, numpy, and scikit-learn to process structured inputs and generate analytical treatment recommendation reports.

Why use LaTeX and PDF templates for clinical decision support instead of standard word processors?

LaTeX and PDF templates enforce rigorous formatting for regulatory submissions and publication-ready clinical decision support documents. This approach guarantees consistent GRADE evidence grading, precise TikZ decision algorithms, and high-quality visuals that standard word processors cannot reliably automate.