clinical-decision-support

Generate publication-ready clinical decision support documents from biomarker-guided cohort analyses.

94|11|Updated Mar 26, 2026
One-click install
npx skills add https://github.com/swaruplab/operon --skill clinical-decision-support-swaruplab
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: clinical-decision-support
Source: https://github.com/swaruplab/operon/tree/main/src-tauri/protocols/clinical-decision-support
Command: npx skills add https://github.com/swaruplab/operon --skill clinical-decision-support-swaruplab

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires pandas, numpy, scipy, lifelines, matplotlib, and includes scripts (resource) and references (resource) and assets (resource) components.

What problem does it solve?

Generate publication-ready clinical decision support (CDS) documents from biomarker-guided cohort analyses and treatment recommendation workflows, streamlining evidence synthesis into polished LaTeX/PDF outputs.

Core Features & Use Cases

  • Biomarker-guided cohort analyses with statistical summaries, figures (Kaplan-Meier, forest plots), and CONSORT-style flows.
  • Evidence-based Treatment Recommendation Reports using GRADE grading, evidence tables, and TikZ decision algorithms.
  • Publication-ready documents leveraging LaTeX templates, 0.5in margins, and professional formatting for regulatory submissions, medical affairs, and scientific communication.

Quick Start

Provide a complete CDS document for a defined cohort using the built-in LaTeX templates.

Frequently Asked Questions about clinical-decision-support

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I generate publication-ready clinical decision support documents from cohort analyses?

You can generate publication-ready clinical decision support documents by automating biomarker-guided cohort analyses into LaTeX/PDF outputs. The process integrates executive summaries, evidence tables, and decision algorithms using template-driven formatting for regulatory submissions.

What is GRADE grading and how does it apply to evidence-based treatment recommendation reports?

GRADE grading is a structured approach to rate evidence quality in treatment recommendation reports. It synthesizes cohort analysis data into evidence tables, enabling standardized clinical decision support algorithms and regulator-ready document generation.

Can I create Kaplan-Meier survival curves and forest plots for biomarker-guided cohort analyses?

Yes, you can create Kaplan-Meier survival curves and forest plots for biomarker-guided cohort analyses. The environment leverages lifelines and matplotlib to produce statistical summaries and figures directly within publication-ready LaTeX documents.

Does this workflow support TikZ flowcharts for clinical decision algorithms in LaTeX?

Yes, the workflow supports TikZ flowcharts for clinical decision algorithms in LaTeX. It renders CONSORT-style flows and decision trees directly into PDF outputs, ensuring professional formatting with 0.5in margins for regulatory submissions.

Do I need pandas and scipy installed to run biomarker-guided cohort analyses?

Yes, you need pandas, numpy, scipy, and lifelines installed to run biomarker-guided cohort analyses. These dependencies provide the necessary statistical computing environment for generating evidence tables and survival analyses.

What is the best way to format evidence synthesis outputs for pharmaceutical regulatory submissions?

The best way to format evidence synthesis outputs for pharmaceutical regulatory submissions is using template-driven LaTeX documents. This approach applies GRADE grading and professional formatting to deliver standardized clinical decision support PDFs.