clinical-reports

Generate CARE-compliant clinical reports with automated privacy validators.

4|1|Updated Jun 18, 2025
One-click install
npx skills add https://github.com/HolobiomicsLab/Toolomics --skill clinical-reports-holobiomicslab
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: clinical-reports
Source: https://github.com/HolobiomicsLab/Toolomics/tree/main/mcp_host/skills/scientific-skills/scientific-skills/clinical-reports
Command: npx skills add https://github.com/HolobiomicsLab/Toolomics --skill clinical-reports-holobiomicslab

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes scripts (resource) and references (resource) and assets (resource) components.

What problem does it solve?

Clinicians and medical writers need to produce CARE-compliant case reports, diagnostic radiology/pathology/lab reports, CSRs, SAE narratives, and everyday patient documentation with strict privacy and regulatory standards. This Skill provides structured templates, reference materials, and validation tools to streamline compliant medical documentation.

Core Features & Use Cases

  • CARE-compliant Case Reports: Templates and guidance aligned with CARE essentials to improve completeness and reproducibility.
  • Diagnostic Reports & CSRs: Structured formats and references for radiology, pathology, lab reports, SAE narratives, and clinical-study reporting (ICH-E3).
  • Patient Documentation: Proformas for SOAP notes, H&Ps, discharge summaries, and consult notes with privacy-preserving guidance.
  • Compliance & Validation: Regulatory checklists (HIPAA, FDA, ICH-GCP) and automated validators to ensure de-identification and quality.

Quick Start

Generate a CARE-compliant case report template and validate de-identification using the provided scripts.

Frequently Asked Questions about clinical-reports

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I write a CARE-compliant case report using structured templates?

To write a CARE-compliant case report, use structured templates with frontmatter-driven organization and automated validators. This ensures your case report meets CARE essentials for completeness, reproducibility, and privacy standards.

What is the best way to generate HIPAA-compliant clinical documentation for patient records?

Generating HIPAA-compliant clinical documentation requires privacy-preserving proformas and regulatory checklists. Templates for SOAP notes, H&Ps, and discharge summaries include automated validators to ensure proper de-identification and quality.

Can I use this for ICH-GCP clinical study reports and SAE narratives?

Yes, you can use this for ICH-GCP clinical study reports and SAE narratives. It provides structured formats and references aligned with ICH-E3 reporting standards for diagnostic reports, CSRs, and safety event documentation.

Does this provide automated validation for de-identification in diagnostic radiology and pathology reports?

Yes, this provides automated validation for de-identification in diagnostic radiology and pathology reports. Scripts and validators check your clinical documentation against HIPAA and regulatory checklists to ensure privacy compliance.

What types of clinical reports are supported by these structured templates?

Supported clinical report types include CARE case reports, diagnostic radiology, pathology, lab reports, CSRs, SAE narratives, and general patient documentation. Each template applies frontmatter-driven structure with privacy and regulatory guidance.

How do I validate de-identification in clinical study reports before submission?

To validate de-identification in clinical study reports, run the provided scripts against your documentation. Automated validators check for privacy compliance using HIPAA, FDA, and ICH-GCP regulatory checklists to ensure safe submission.