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MubasherMohammed
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clinical-trial-finder

Retrieve clinical trial information from ClinicalTrials.gov and EUCTR for genes, variants, or conditions.

Updated May 10, 2026
Search Tags:#research#bioinformatics#genomics#data retrieval#clinical trials
One-click install
npx skills add https://github.com/MubasherMohammed/opencode-BioInfo --skill clinical-trial-finder
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: clinical-trial-finder
Source: https://github.com/MubasherMohammed/opencode-BioInfo/tree/main/python/skills/clinical-trial-finder
Command: npx skills add https://github.com/MubasherMohammed/opencode-BioInfo --skill clinical-trial-finder

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires requests, json, pandas, matplotlib, and includes scripts (resource) and references (resource) and assets (resource) components.

What problem does it solve?

This Skill helps users quickly find clinical trials for specific genes, variants, or conditions, providing detailed information and output formats like FHIR R4 and CSV.

Core Features & Use Cases

  • Clinical Trial Search: Find trials for genes, variants, or conditions from ClinicalTrials.gov and EUCTR.
  • Output Formats: Outputs include Markdown report, JSON summary, FHIR R4 Bundle, and CSV table.
  • Use Case: If you're a researcher looking for clinical trials related to a specific gene, you can use this Skill to find relevant trials, including their phases, statuses, and interventions.

Quick Start

Use the clinical-trial-finder skill to find trials for the gene 'BRCA1'.

Frequently Asked Questions about clinical-trial-finder

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I find clinical trials for specific genetic variants or conditions?▼

You can find clinical trials for specific genetic variants or conditions by querying the ClinicalTrials.gov and EUCTR APIs to retrieve trial statuses, phases, and interventions into structured reports.

Can I export clinical trial search results to FHIR R4 or CSV?▼

Yes, clinical trial search results can be exported to FHIR R4 Bundles and CSV tables, alongside Markdown reports and JSON summaries, for seamless data integration and analysis.

What Python dependencies do I need to retrieve clinical trial data?▼

You need Python with the requests, json, pandas, and matplotlib libraries installed to access the ClinicalTrials.gov and EUCTR APIs and process the retrieved trial data.

How does searching for clinical trials by gene name work?▼

Searching by gene name involves querying the ClinicalTrials.gov and EUCTR APIs with the specified gene identifier to return matching trial records, detailed reports, and structured data outputs.

What is the best way to analyze clinical trial phases and interventions from bioinformatics research?▼

The best way to analyze clinical trial phases and interventions is to retrieve the data as a pandas-compatible CSV table, enabling structured filtering and downstream bioinformatics data analysis.

Are there limitations when retrieving trial data from ClinicalTrials.gov and EUCTR?▼

Retrieval is limited by the availability and query capabilities of the ClinicalTrials.gov and EUCTR APIs, requiring active internet access and proper Python environment configuration to function correctly.

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