Mubasher Mohammed
Community@mubashermohammed · Stockholm
Agent Skills by Mubasher Mohammed
Showing 72 vetted skills indexed across 1 GitHub repositories.
MubasherMohammedde-summary
Summarize differential expression results from DESeq2, edgeR, or limma outputs.
MubasherMohammedbioconductor-bridge
Recommend Bioconductor packages and workflows for bioinformatics analysis tasks.
MubasherMohammedvcf-annotator
Annotate genomic variants in VCF files using Ensembl VEP, ClinVar, and gnomAD APIs.
MubasherMohammednutrigx-advisor
Analyze genetic data to generate personalized nutrition reports with risk scores.
MubasherMohammedvariant-annotation
Annotate VCF variants with Ensembl VEP, ClinVar, and gnomAD data.
MubasherMohammedlabstep
Access and manage Labstep electronic lab notebook data via the Labstep API.
MubasherMohammedhla-typing
Automate HLA allele typing from WGS/WES VCF data into markdown and JSON reports.
MubasherMohammedbigquery-public
Execute read-only SQL queries on BigQuery public datasets and save results locally.
MubasherMohammedscrna-orchestrator
Automate single-cell RNA-seq analysis with Scanpy, including QC, clustering, and reporting.
MubasherMohammedstruct-predictor
Predict protein structures from YAML inputs using Boltz-2.
MubasherMohammedlit-synthesizer
Search PubMed and bioRxiv, summarize abstracts, and build citation graphs.
MubasherMohammedclinical-variant-reporter
Classify germline variants from VCF files using ACMG/AMP 2015 criteria.
MubasherMohammedaffinity-proteomics
Automate affinity proteomics analysis with platform-aware QC and differential testing.
MubasherMohammedprofile-report
Synthesize bioinformatics skill results into a unified genomic profile report.
MubasherMohammedclaw-semantic-sim
Compute semantic connectivity metrics for disease research using PubMedBERT embeddings.
MubasherMohammedrepro-enforcer
Export Conda environments, Singularity definitions, and Nextflow pipelines for reproducible bioinformatics analyses.
MubasherMohammedskill-builder
Generate ClawBio skill directories with SKILL.md, Python skeleton, and tests from JSON or YAML spec files.
MubasherMohammedseq-wrangler
Automate NGS read alignment and processing from FASTQ to BAM.
MubasherMohammedprotocols-io
Search and retrieve scientific protocols from protocols.io via REST API.
MubasherMohammedclinical-trial-finder
Retrieve clinical trial information from ClinicalTrials.gov and EUCTR for genes, variants, or conditions.
MubasherMohammedflow-bio
Automates authentication, browsing, uploading, and executing pipelines on the Flow.bio platform via REST API requests.
MubasherMohammedcell-detection
Segment cells in fluorescence microscopy images with Cellpose and extract morphology metrics.
MubasherMohammedmendelian-randomisation
Conduct Mendelian Randomization analysis on GWAS summary statistics for causal inference.
MubasherMohammedscrna-embedding
Generate scVI/scANVI latent embeddings and batch integration for scRNA-seq data.