profile-report

Synthesize bioinformatics skill results into a unified genomic profile report.

Updated May 10, 2026

Search Tags:#bioinformatics #pharmacogenomics #nutrigenomics #genomic profile #polygenic risk

Ready to run

npx skills add https://github.com/MubasherMohammed/opencode-BioInfo --skill profile-report-mubashermohammed

💬 Prompt for ChatGPT / Claude Chat▼

Please help me install this Agent Skill.
Skill: profile-report
Source: https://github.com/MubasherMohammed/opencode-BioInfo/tree/main/python/skills/profile-report
Command: npx skills add https://github.com/MubasherMohammed/opencode-BioInfo --skill profile-report-mubashermohammed

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires python3, clawbio, and includes scripts (resource) and references (resource) components.

What problem does it solve?

This Skill synthesizes results from multiple bioinformatics analysis skills into a single, comprehensive genomic profile report, providing a holistic view of the user's genomic information.

Core Features & Use Cases

Unified Report Generation: Combines results from various bioinformatics skills like pharmacogenomics, nutrigenomics, polygenic risk scores, and genome comparison.
Cross-Domain Insights: Identifies connections between different skill results, highlighting cross-domain insights.
Use Case: A user who has run multiple bioinformatics analysis skills can use this Skill to generate a single report that consolidates all the information, making it easier to understand and interpret their genomic profile.

Quick Start

Run the profile-report skill with your PatientProfile JSON file and output directory:

python skills/profile-report/profile_report.py --profile <path_to_profile.json> --output <output_directory>

Frequently Asked Questions about profile-report

High-intent search queries and answers about installing and using this skill.

FAQPage Schema

How do I generate a unified genomic profile report from multiple bioinformatics analyses?▼

A unified genomic profile report combines results from pharmacogenomics, nutrigenomics, and polygenic risk assessments into a single document. It synthesizes outputs from multiple bioinformatics skills to provide a holistic view of your genomic information and highlight cross-domain insights.

Can I combine pharmacogenomics and nutrigenomics results into a single report?▼

Yes, you can combine pharmacogenomics and nutrigenomics results. This Skill synthesizes multiple bioinformatics analysis outputs into one comprehensive report, identifying connections between different domains to highlight cross-domain insights within your genomic data.

How do I run a genomic profile report using a PatientProfile JSON file?▼

To run the genomic profile report, execute the Python script with your PatientProfile JSON file and an output directory. You need Python 3.10+ and the ClawBio runner, using the command: python profile_report.py --profile <path> --output <dir>.

Do I need Python 3.10 and ClawBio to synthesize polygenic risk scores into a report?▼

Yes, you need Python 3.10+ and the ClawBio runner to synthesize polygenic risk scores. These dependencies are required to execute the script, validate PatientProfile JSON files, and generate the unified genomic profile report successfully.

What is the best way to identify cross-domain insights in a personal genomic profile?▼

The best way to identify cross-domain insights in a personal genomic profile is by synthesizing results from multiple bioinformatics skills. This Skill automatically highlights connections between pharmacogenomics, nutrigenomics, and polygenic risk scores into one comprehensive report.