Skills
.Work. You
Rest

flow-bio

Community

Integrate Flow.bio platform into your workflow with ease.

Data & Analytics#bioinformatics#pipelines#Nextflow#execution tracking#flow.bio
AuthorMubasherMohammed
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill streamlines interaction with the Flow.bio platform, allowing users to authenticate, browse, upload, and execute bioinformatics pipelines without navigating the web UI.

Core Features & Use Cases

  • Authentication: Login with credentials or tokens.
  • Pipeline Discovery: List and inspect available Nextflow pipelines.
  • Sample Management: List, search, and upload samples.
  • Project Browsing: List owned/shared projects and their contents.
  • Execution Tracking: Launch pipeline runs, poll status, and retrieve logs.
  • Search: Full-text search across samples, projects, data, and executions.
  • Data Listing: Browse owned and shared data files.
  • Organism & Type Discovery: List available organisms and sample types for uploads.
  • Overview Mode: Live overview of any Flow instance.
  • Use Case: A researcher can quickly launch a Nextflow pipeline on Flow, upload samples, and monitor the execution status from the command line, enabling a seamless integration with their local analysis workflow.

Quick Start

Use the flow-bio skill to list all available pipelines on Flow.

Dependency Matrix

Required Modules

requests

Components

scripts

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: flow-bio
Download link: https://github.com/MubasherMohammed/opencode-BioInfo/archive/main.zip#flow-bio

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
View Source Repository

Agent Skills Search Helper

Install a tiny helper to your Agent, search and equip skill from 620,000+ vetted skills library on demand.