skills.rest
MubasherMohammed
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protocols-io

Search and retrieve scientific protocols from protocols.io via REST API.

Updated May 10, 2026
Search Tags:#protocols.io#scientific methods#DOI lookup#protocol search#protocol steps
One-click install
npx skills add https://github.com/MubasherMohammed/opencode-BioInfo --skill protocols-io
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: protocols-io
Source: https://github.com/MubasherMohammed/opencode-BioInfo/tree/main/python/skills/protocols-io
Command: npx skills add https://github.com/MubasherMohammed/opencode-BioInfo --skill protocols-io

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires requests, and includes scripts (resource) components.

What problem does it solve?

This Skill provides an easy way to search, retrieve, and access scientific protocols from protocols.io, allowing users to quickly find the methods they need for their research.

Core Features & Use Cases

  • Protocol Search: Search public and private protocols by keyword.
  • Protocol Retrieval: Fetch full protocol details including steps, reagents, and metadata.
  • Step Extraction: Retrieve protocol steps in markdown format for immediate use.
  • Use Case: When a user needs a specific protocol for their research, they can use this Skill to search for the protocol and retrieve its details in an easily accessible format.

Quick Start

To search for a protocol, run: protocols-io --search "RNA extraction".

Frequently Asked Questions about protocols-io

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I search for scientific protocols using protocols.io?▼

The Skill retrieves scientific protocols from protocols.io via REST API, extracting full protocol details, steps, reagents, and metadata in markdown format.

Can I extract protocol steps in markdown format for research workflows?▼

Yes, the Skill extracts protocol steps in markdown format for immediate use. It retrieves full protocol details including reagents and metadata to support academic collaborations and research workflows.

Do I need the requests library to access protocols.io API results?▼

Yes, the requests library is required to access the protocols.io API and process results. The Skill depends on this Python library to facilitate REST API communication and protocol retrieval.

What is the best way to retrieve DOI and metadata for scientific methods?▼

Using a REST API client for protocols.io is the best way to retrieve DOI and metadata for scientific methods. This Skill automates that retrieval process, fetching full details including reagents and steps.

Does this protocol search approach work for both public and private protocols?▼

Yes, this approach supports searching both public and private protocols by keyword. It fetches complete protocol details including steps and metadata for research workflows.

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