hla-typing
CommunityAutomate HLA allele typing from WGS/WES VCF data, streamline genomics analysis.
AuthorMubasherMohammed
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the process of HLA allele typing from WGS/WES VCF data, simplifying complex genomics analysis tasks.
Core Features & Use Cases
- Automated HLA Typing: Process WGS/WES VCF data to determine HLA alleles.
- Input Validation and Parsing: Validates and parses input files with format detection.
- Analysis and Reporting: Generates structured markdown reports and machine-readable JSON results.
- Use Case: Streamline your workflow by automating the extraction and analysis of HLA data from large-scale genomic studies.
Quick Start
Run the hla-typing skill with the input file 'my_data.vcf'.
Dependency Matrix
Required Modules
pandas
Components
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: hla-typing Download link: https://github.com/MubasherMohammed/opencode-BioInfo/archive/main.zip#hla-typing Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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