Automate headless execution and editing of Jupyter notebooks using uv and nbformat v4/jtool.
npx skills add https://github.com/gakonst/dotfiles --skill data
Please help me install this Agent Skill. Skill: data Source: https://github.com/gakonst/dotfiles/tree/main/.codex/skills/data Command: npx skills add https://github.com/gakonst/dotfiles --skill data
This Skill standardizes notebook workflows, enabling headless execution, editing, and dependency management with uv. It avoids using pip/venv and keeps CI parity with ruff, mypy, and pytest.
uv run --with pandas --with matplotlib --with notebook python -m jupyter nbconvert --to notebook --execute your.ipynb --output your.ipynb --ExecutePreprocessor.timeout=180
High-intent search queries and answers about installing and using this skill.
Headless notebook execution runs cells programmatically without a visible interface. This Skill automates that process using uv for dependency isolation and nbconvert for execution, letting you execute notebooks in CI/CD pipelines or batch jobs without a Jupyter server or display.
Yes. This Skill uses uv to manage dependencies and execute notebooks headlessly, avoiding traditional pip/venv workflows. It keeps your notebook environment isolated and maintains parity with standard Python tooling like ruff and pytest.
Edit notebooks by working directly with nbformat v4 JSON structure. This Skill lets you patch cells, generate notebooks, or modify metadata without opening the notebook UI, enabling automation of notebook generation and transformation.
No. While this Skill can use jtool to manage a local Jupyter server if available, it also supports pure headless execution via uv and nbconvert, so you can run notebooks without a server.
Use this Skill to standardize notebook execution in CI with uv for dependency isolation and nbconvert for headless running. It integrates with existing CI tooling and avoids environment drift by keeping workflows consistent with ruff, mypy, and pytest.
Yes. This Skill passes configuration to nbconvert's ExecutePreprocessor, including timeout settings. You can specify execution duration limits to prevent long-running cells from blocking your pipeline.
ya-wayGenerate a reproducible Jupyter notebook documenting the Cytoclaw analysis pipeline with nbformat.
Kang-chenAutomate Jupyter notebook editing, execution, and format conversion.
nkhokhlaConfigure uv/Jupyter Python projects with src, notebooks, tests, and quality checks.
marcinmiklitzCreate, edit, execute, diff, and convert Jupyter notebooks programmatically.
