deep-learning-genomics
CommunityAnalyze genomic sequences with deep learning models.
Education & Research#deep learning#sequence analysis#genomic analysis#variant effect prediction#transcription factor binding
Authorpradyumnasagar
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates genomic sequence analysis using deep learning models, providing insights into transcription factor binding, variant effects, and functional annotations.
Core Features & Use Cases
- Predict Transcription Factor Binding: Analyze DNA sequences to predict transcription factor binding sites.
- Variant Effect Scoring: Score the effect of genetic variants in noncoding regions.
- Genome Annotation: Generate per-base functional annotations for the entire genome.
- Use Case: For a researcher studying gene regulation, this Skill can predict where transcription factors are likely to bind in the genome, aiding in understanding gene expression patterns.
Quick Start
Analyze the DNA sequence for potential transcription factor binding sites using the deep-learning-genomics skill.
Dependency Matrix
Required Modules
torchkerastensorflowbiotitepyfaidxscikit-biopybedtoolsdna-nlphyena-dnatransformers
Components
scriptsreferencesassets
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: deep-learning-genomics Download link: https://github.com/pradyumnasagar/open-research-skills/archive/main.zip#deep-learning-genomics Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 620,000+ vetted skills library on demand.