Pradyumna Jayaram
Community@pradyumnasagar · Manipal
PhD Scholar, Manipal School Of Life Sciences, Manipal #OpenSourceDeveloper #LifeSciences #ComputationalBiology
Agent Skills by Pradyumna Jayaram
Showing 125 vetted skills indexed across 1 GitHub repositories.
pradyumnasagarbioinformatics-sequence
Parse, align, and quality-check bioinformatics sequences from FASTA, FASTQ, BAM, and VCF files.
pradyumnasagargood-skill
Validate test fixtures against predefined criteria for automated testing.
pradyumnasagarrelease-management
Manages ORS skill releases with versioning, changelogs, and marketplace updates.
pradyumnasagarcross-reference-mapper
Generate and validate cross-references between ORS skills.
pradyumnasagarroadmap-author
Guide authors through creating and validating ORS SKILL.md files.
pradyumnasagarintegrity-audit
Audit AI-generated research artifacts for citations, failures, and scope creep.
pradyumnasagaragent-handoff
Automate inter-skill data transfer and provenance capture via JSON Material Passports.
pradyumnasagarpreregistration
Automates preregistration of study protocols and analysis plans to multiple platforms.
pradyumnasagarcode-release
Automate research code releases with Zenodo DOI minting and Docker containerization.
pradyumnasagarfair-data
Guide researchers in applying FAIR data principles to research data.
pradyumnasagarlicensing
Guide license selection for research data, code, and publications.
pradyumnasagarpreprints
Select preprint servers, licenses, and journal transfer workflows for research manuscripts.
pradyumnasagarai-disclosure
Generate AI/LLM usage disclosures for research publications.
pradyumnasagarirb-protocol
Guide creation and review of IRB protocols for human-subjects research.
pradyumnasagardata-privacy
Guide research study data privacy compliance with HIPAA and GDPR.
pradyumnasagarimage-integrity
Audit research images for integrity using ImageJ and Python scripts.
pradyumnasagarsequence-properties
Compute GC content, molecular weight, and melting temperature for DNA, RNA, and protein sequences.
pradyumnasagarfastq-quality-scores
Filters and trims Phred quality scores in FASTQ reads using Biopython and NumPy.
pradyumnasagarbowtie2-alignment
Align short reads to a reference genome using Bowtie2.
pradyumnasagarformat-conversion
Convert biological sequence files between FASTA, GenBank, and EMBL formats.
pradyumnasagarseq-objects
Guides the use of BioPython's Seq, MutableSeq, and SeqRecord for sequence manipulation.
pradyumnasagarfilter-sequences
Filter biological sequences by length, identity, regex, GC content, complexity, and custom predicates using Biopython.
pradyumnasagarcompressed-sequence-files
Read and write compressed FASTA and FASTQ files in Python.
pradyumnasagarmotif-search
Locate motifs and binding sites in DNA, RNA, and protein sequences using regex, IUPAC, PWMs, and JASPAR.