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format-conversion

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Convert sequence and annotation formats using Biopython for bioinformatics.

#bioinformatics#genomics#biopython#sequence conversion#sequence annotation
Authorpradyumnasagar
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill streamlines the conversion of biological sequence and annotation formats, allowing researchers to quickly transition between formats like FASTA, GenBank, and EMBL, facilitating tool usage and data sharing.

Core Features & Use Cases

  • Cross-Format Conversion: Converts between various biological sequence and annotation formats using Biopython.
  • Batch Conversion: Automates conversion tasks for multiple files.
  • Lossy and Lossless Conversions: Handles both lossy and round-trip-safe conversions, ensuring data integrity.
  • Use Case: Researchers needing to convert their genomic sequences from FASTA to GenBank format for submission to a database.

Quick Start

Run the 'format-conversion' skill with the 'from' and 'to' arguments specifying the input and output file formats, e.g., format-conversion from input.fasta to output.gb.

Dependency Matrix

Required Modules

biopythonseqkit

Components

scripts

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: format-conversion
Download link: https://github.com/pradyumnasagar/open-research-skills/archive/main.zip#format-conversion

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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